PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OMERI01G33390.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NF-YB
Protein Properties Length: 180aa    MW: 19311.8 Da    PI: 6.1178
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OMERI01G33390.2genomeOGEView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB176.13.5e-5536129194
            NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrele 94 
                      vreqdrflPian+srimkk++Pan+ki+kdaket+qecvsefisfvtseasdkcq+ekrkting+dll+a++tlGfe+yv+plk+yl+kyre +
  OMERI01G33390.2  36 VREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREGD 129
                      69*****************************************************************************************965 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.101.4E-5234138IPR009072Histone-fold
SuperFamilySSF471134.04E-3939134IPR009072Histone-fold
PfamPF008083.8E-2842106IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006152.7E-227088No hitNo description
PROSITE patternPS0068507389IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006152.7E-2289107No hitNo description
PRINTSPR006152.7E-22108126No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 180 aa     Download sequence    Send to blast
MVCAVMMMDL GFLEGGAGMA DAGHDESGSP PRSGGVREQD RFLPIANISR IMKKAVPANG  60
KIAKDAKETL QECVSEFISF VTSEASDKCQ KEKRKTINGE DLLFAMGTLG FEEYVDPLKI  120
YLHKYREGDS KLSSKAGDGS VKKDTIGPHS GASSSSAQGM VGAYTQGMGY MQPQYHNGDT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_B8e-4936127192Transcription factor HapC (Eurofung)
4g92_B8e-4936127192Transcription factor HapC (Eurofung)
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0954380.0AB095438.1 Oryza sativa Japonica Group OsHAP3A mRNA for HAP3, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015611518.11e-117PREDICTED: nuclear transcription factor Y subunit B-2 isoform X1
SwissprotQ5QMG31e-120NFYB2_ORYSJ; Nuclear transcription factor Y subunit B-2
TrEMBLA0A0E0C9Y11e-132A0A0E0C9Y1_9ORYZ; Uncharacterized protein
STRINGBGIOSGA000540-PA1e-117(Oryza sativa Indica Group)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37060.31e-65nuclear factor Y, subunit B8